p3-get-feature-sequence

Create A FASTA File of Feature Sequences

p3-get-feature-sequence [options] < feature-ids

This script takes as input a table of feature IDs and outputs a FASTA file of the feature sequences. The FASTA comment will be the feature annotation (product).

Parameters

There are no positional parameters.

The standard input can be overridden using the options in Input Options.

The command-line options are those in Column Options (to choose the input column) plus the following.

protein

Output amino acid sequences (the default).

dna

Output DNA sequences (mutually exclusive with protein).