p3-get-drug-genomes

Return AMR Data for Drugs From PATRIC

p3-get-drug-genomes [options]

This script returns general anti-microbial resistance data given an input column of drug names. It supports standard filtering parameters and the specification of additional output columns if desired.

Parameters

There are no positional parameters.

The standard input should contain drug names in the key column. You may specify the standard input using the options in Input Options.

Additional command-line options are those given in Data Options and Column Options plud the following

fields

Show available fields.

resistant

Filter for genomes resistant to the incoming drug.

susceptible

Filter for genoems susceptible to the incoming drug.