Instructional Videos

Below are short YouTube instructional videos to help with performing common useful tasks in PATRIC. The videos can also be accessed directly from the the PATRIC YouTube channel.

Genomics Services and Tools

Tutorials

• Tutorial: Genome Assembly Service
• Tutorial: Genome Annotation Service
• Tutorial: Comprehensive Genome Analysis Service
• Tutorial: Similar Genome Finder Service
• Tutorial: Phylogenetic Codon Tree Service

Common Tasks

• Add track to Circular Genome Viewer (6:31)
• Create a Genome Group (9:08)
• Finding genes in a Genome Group (11:32)
• Check if genome set is “tree-able” (15:04)
• Generate a Mulitple Sequence Alignment (3:51)

Metagenomics Services and Tools

Tutorials

• Metagenomic Read Mapping Service - Looking for AMR or virulence genes in metagenomic data (5:17)
• Taxonomic Classification Service (17:20)

Protein Services and Tools

Tutorials

• Tutorial: Protein Family Sorter Service
• Tutorial: Proteome Comparison Service

Data Services and Tools

Tutorials

• ID Mapping - finding genes (11:01)

Workspace and Files

Tutorials

Coming soon

Common Tasks

• I can’t see my reads - tagging uploaded data for analysis in PATRIC (4:50)
• Uploading files to the workspace (14:51)
• Comparing PATRIC groups with the Venn Diagram Tool (8:01)
• Downloading data for private genomes (5:10)