p3-genome-fasta

Return a FASTA file for a Genome

p3-genome-fasta [options] genomeID

This script returns a FASTA file for a specified genome. You can specify feature proteins, feature DNA, or contig DNA.

Parameters

The positional parameter is the desired genome ID.

The command-line options are as follows. All three are mutually exclusive.

protein

If specified, the output will be a protein FASTA file.

feature

If specified, the output will be a feature DNA FASTA file.

contig

If specified, the output will be a contig DNA FASTA file. this is the default.