PATRIC Command Line Program ReferenceΒΆ
- Common Options to Command Line Programs
- GenomeTypeObject
- Hsp
- Sim
- p3-all-drugs
- p3-all-genomes
- p3-blast
- p3-build-kmer-db
- p3-closest-seqs
- p3-count
- p3-echo
- p3-extract
- p3-feature-gap
- p3-feature-upstream
- p3-file-filter
- p3-find-couples
- p3-find-features
- p3-find-in-clusters
- p3-format-results
- p3-function-to-role
- p3-generate-close-roles
- p3-generate-clusters
- p3-genome-fasta
- p3-get-drug-genomes
- p3-get-family-data
- p3-get-family-features
- p3-get-feature-data
- p3-get-feature-group
- p3-get-feature-sequence
- p3-get-features-by-sequence
- p3-get-genome-contigs
- p3-get-genome-data
- p3-get-genome-drugs
- p3-get-genome-features
- p3-get-genome-group
- p3-gto
- p3-gto-dna
- p3-gto-fasta
- p3-gto-scan
- p3-identify-clusters
- p3-join
- p3-kmer-compare
- p3-list-feature-groups
- p3-list-genome-groups
- p3-login
- p3-match
- p3-merge
- p3-pick
- p3-project-subsystems
- p3-put-feature-group
- p3-put-genome-group
- p3-rast
- p3-related-by-clusters
- p3-rep-prots
- p3-sequence-profile
- p3-set-to-relation
- p3-signature-clusters
- p3-signature-families
- p3-signature-peginfo
- p3-sort
- p3-stats
- p3-tbl-to-fasta