p3-find-features¶
Find Features By Filtering on a Field¶
p3-find-features.pl [options] keyName
This script finds features based on the value in one of several feature-identifying fields (other than patric_id
).
It provides standard filtering parameters to otherwise limit the output. (So, for example, you can require that the
features output belong only to a specific genome using --eq genome_id
.)
Parameters¶
The positional parameter is the name of the field used to match the incoming keys. The following fields are permitted.
refseq_locus_tag
The locus tag from REFSEQ
protein_id
The REFSEQ protein ID.
gene
The common gene name (e.g.
rpoA
).
gene_id
The standard gene number.
aa_sequence_md5
The protein sequence MD5 code.
The standard input can be overridden using the options in Input Options.
Additional command-line options are those given in Data Options and Column Options plus the following.
keyNames
Rather than processing the input, list the valid key names.