Tutorials

The PATRIC website provides the capability to perform a broad array of analyses. These Tutorials provide step-by-step instructions for performing common tasks and analyses using the website. The examples are chosen to also provide a relevant biological context to help deomonstrate utility and interpretation of the data and results.

Genomics

• Assembling a Genome
• Genome Annotation
• Analyzing Genome Quality
• Comprehensive Genome Analysis Service
• Comparing Your New Genome to Existing Neighbors
• Exploring a Private Genome
• BLAST Service
• Similar Genome Finder
• Submitting the Comprehensive Genome Analysis Job
• Submitting a Variant Analysis Job
• Submitting a Tn-Seq Job
• Building Phylogenetic Trees - Codon Trees
• Fastq Utilities
• Locating All Genomes for a Taxonomic Group
• Searching for Features by Protein Family
• Finding the Roles in a Genome

Metagenomics

• Metagenomic Read Mapping
• Taxonomic Classification
• Using the PATRIC Metagenomic Binning Service
• Analyzing Your Metagenomic Bins

Transcriptomics

• Expression Import
• Submitting an RNA-Seq Job
• Examining Transcriptomics Data

Protein Tools

• Comparing Protein Families Across Individual Genomes and Genome Groups
• Proteome Comparison: Comparing Annotated Proteins Across Genomes.
• Proteome Comparison: Formatting an Excel File To Scan Comparison Genomes
• Creating a Multiple-Sequence Alignment

Metabolomics

• Comparing Pathways Across Genomes Or Genome Groups
• Metabolic Model Reconstruction

Data

• ID Mapper

Others

• Analyzing Genome Quality
• Creating Genome Groups
• Examining Antimicrobial Resistance (AMR)
• Reconstructing Genomes from Metagenomic Samples Using the RAST Binning Service (RBS)
• Developing PATRIC Code at Argonne
• How to enable Adobe Flash Player
• Sharing Data in the Workplace
• Sharing a Private Genome
• Building the Mac CLI Release
• Building the Ubuntu CLI Release
• Configuring Unbuntu for Build
• SARS-CoV-2 Genome Assembly and Annotation Service