PATRIC/RAST Workshop at Argonne National Laboratory, May 7-9, 2018

Introduction

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Assemble a Genome in PATRIC and Data Upload

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Annotate a Genome in PATRIC Using RASTtk

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Proteomic Comparison

Comparative Genomics: Protein Families and Pathways

Running PATRIC’s Tree Building Service

BLAST at PATRIC

Similar Genome Finder Service

RNA-Seq Pipeline, Downloading Data into PATRIC and Differential Expression

Expression Data Import Service

Comparative Transcriptomics: Exploring Public and Private Expression Data

SNP and MNP Variation service

Metagenome Binning Service

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Building a metabolic model

PATRIC Command Line Interface

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