PATRIC/RAST Workshop at Argonne National Laboratory, April 16-18, 2019¶
The PATRIC/RAST teams will be offering a tutorial workshop April 16-18, 2019, at Argonne National Laboratory in the suburbs of Chicago, IL. The workshop will run for three days, with the third day optional and devoted solely to participants working on their own problems with help from the PATRIC/RAST team members.
The workshop will be limited to 40 people on a first-come, first-served basis. There is no fee for the workshop, but participants are responsible for their own travel expenses. If you wish to participate, we encourage you to respond quickly at rast-workshop@mcs.anl.gov
NOTE: All workshop attendees must also separately fill out the “Argonne Visitor Request” form at: https://apps.anl.gov/registration/visitors as soon as possible — but especially non-U.S. Citizens, since they will take additional time to be cleared. Please enter Lisa Hundley, lhundley@anl.gov, for the “Sponsor’s E-mail Address.”
LOCATION
AGENDA
Tuesday, April 16
9:00 am Register for PATRIC Account, Overview (www.patricbrc.org)
10:15 am Comprehensive Genome Analysis
11:00 am Break
11:10 am Assemble a Genome in PATRIC and Data Upload
11:40 am Annotate a Genome in PATRIC Using RASTtk
12:00 pm Lunch
1:00 pm Similar Genome Finder Service
1:30 pm Running PATRIC’s Tree Building Service
2:15 pm Break
2:30 pm Proteome Comparison
3:15 pm Comparative Genomics: Protein Families and Pathways
4:30 pm Question and Answer Session and Hands-on Work
5:00 pm Day 1 Adjourn
Wednesday, April 17
9:00 am BLAST at PATRIC
9:30 am RNA-Seq Pipeline, Downloading Data into PATRIC and Differential Expression
10:00 am Break
10:15 am Expression Data Import Service
10:45 pm Comparative Transcriptomics: Exploring Public and Private Expression Data in PATRIC
12:00 pm Lunch
1:00 pm SNP and MNP Variation service
2:00 pm Metagenome Binning Service
3:00 pm Building a Metabolic Model
4:00 pm Question and Answer Session and Hands-on Work
5:00 pm Day 2 Adjourn
Thursday, April 18
9:00 am Introduction to PATRIC Command Line Interface (CLI)
11:00 am Break
11:15 am Work with Your Private Data
12:00 pm Lunch
1:00 pm Work with Your Private Data
3:00 pm Question and Answer Session and Hands-on Work
4:00 pm Workshop Concludes